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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACTAGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGgtattatttctttatattgtatgaaacacacacaaaccgatatttgcaggattcagttaactgttagcaaatctcatttcctactgtggggtttcttgtctttttag

Basic information

species Arabidopsis thaliana
transcript AT2G35020.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 14
GAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACTAGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGgt-attatttctttatattgtatgaaaca-cacacaaaccgatatttgcaggattcagttaactgttagcaaatctcatttcctactgtggggtttcttgtctttttag------------------------------------------------------------------------------------------
|||||| ||||| || ||| ||||  | | | ||||| ||||||| |||||||| ||||| |||   ||||| ||||||||| ||||||||||||||||||| | |||   | || ||||  | ||| | |        |  |       ||| | ||||  || ||  |    ||||  |  ||   ||   ||  ||  ||  || |                                                                                          
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataattctaaattggcttaaatatctttttggtccttcaaatttggactaagtttgcttttgtc---cctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatccttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcag

upper sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 13
GAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACTAGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGgt-attatttctttatattgtatgaaaca-cacacaaaccgatatttgcaggattcagttaactgttagcaaatctcatttcctactgtggggtttcttgtctttttag
|||||| ||||| || ||| ||||  | | | ||||| ||||||| |||||||| ||||| |||   ||||| ||||||||| | ||||||||||||||||| | |||   | || |||| || ||| | |        |          |||   ||||  || |  |     ||||  |  ||  |||   ||  | |||       
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtgaatataattctaaattggattaaatatctttttggtcctccaaatttggaccaagtttgctttaggtc--cctcaaattttaaagtgattttcttagtc-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828124|gb|CK117808.1|CK117808
EST:     AGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAG                         GTGTTGAGGGAGGAAGAGTTTGCACCGGTGAAGAACGCAAACGGGTCGAAT
genomic: AGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGgtattatttc ... gtctttttagGTGTTGAGGGAGGAAGAGTTTGCACCGGTGAAGAACGCAAACGGGTCGAAT
EST: gi|124948627|gb|EL024359.1|EL024359
EST:     AGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAG                         GTGTTGAGGGAGGAAGAGTTTGCACCGG
genomic: AGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGgtattatttc ... gtctttttagGTGTTGAGGGAGGAAGAGTTTGCACCGG