Sequence
atgc intronic sequence ATGC exonic sequenceGTGTGCTTACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTgtgagatgctttttactgaaattttatcctgcaatatgcaaacatttgacatattcaataactgatagcgaatctcttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G35020.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
GTGTGCTTACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTg----tgagatgcttttt--actgaaattttatcctgcaatatgcaaacatttgacatattcaataactgatagcgaatctc--ttgcag----------
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GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttaactccaaccttctgcccccattatttgtcctccatcttgcttcttattgttttctgaattccaactgcgaagacatttac
upper sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 12
GTGTGCTTACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTgtgag-atgctttttactgaaattttat---cctgcaatatgcaaacatttgacatatt--caataactgatagcgaatctcttgcag------------
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GTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttcactccaacctccctgcccccattattcatcctccatcttgcttcttattgttttctgaattccaactgtgaagacattta
upper sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
GTGTGCTTACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTgtgagatgctttttactgaaatttt-atcctgcaatatg-caaacatttga---catattcaataactgatagcgaatctcttgcag--------------
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GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttttgaaaccacattcaa-gacccacaggattacccatttaacattgacctaaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47828124|gb|CK117808.1|CK117808EST: ACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGT TTACCATTTGGCGGAGAAGAAGATACCGTCTATAAATGGCGACATAGTGGG
genomic: ACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTgtgagatgct ... tctcttgcagTTACCATTTGGCGGAGAAGAAGATACCGTCTATAAATGGCGACATAGTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTGCTTACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTgtgagatgctttttactgaaattttatcctgcaatatgcaaacatttgacatattcaataactgatagcgaatctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA