Sequence
atgc intronic sequence ATGC exonic sequenceGGAACAAGACTTGGAAGTTCAGATCCAAAAGGGTGTTATAgtgagtagttctcatttcagttctgtctttgctgaacatcttctatacgttcttgcaaatttccttagcaagttcagattctcttgttttagtgaatgcgacattcaataacagatgacgtttactgttgttacctgtatattttgttaccttaccataataattttatcatctcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G35020.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G26240.1 (Glycine max), 5'ss of exon 4
GGAACAAGACTTGGAAGTTCAGATCCAAAAGGGTGTTATAgtgagtagttctcatttcagttctgtctttgctgaacatcttctatacgttcttgcaaatttccttagcaagttcagattctcttgttttagtgaatgcgacattcaataacagatgacgtttactgttgttacctgtatattttgttaccttaccataataattttatcatctcag
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GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAgtgagta-ttctcacttga----------tattgaaagcaaattattgaagct--caaatttctttagttggcgt-gttggaccagtttgatagaaacagaggcacaatgctac---------------------------------------------------------------
upper sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 5
GGAACAAGACTTGGAAGTTCAGATCCAAAAGGGTGTTATAgtgagtagttctcatttcagttctgtctttgctgaacatcttctatacgttcttgcaaatttccttagcaagttcagattctcttgttttagtgaatgcgacattcaataacagatgacgtttactgttgttacctgtatattttgttaccttaccataataattttatcatctcag
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GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAgtgagta-ttttcacttga----------tattgaaagcaaattattgaaact--caaatttctttagttggcgt-gttggaccagtttgatagaaacagaggcacaatgctac---------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116428980|gb|EG471572.1|EG471572EST: GGAACAAGACTTGGAAGTTCAGATCCAAAAGGGTGTTATA ATATCGGACTGCCATCTGGGAAATCACTTTTTCAGATTCAAGCTGAGAGGA
genomic: GGAACAAGACTTGGAAGTTCAGATCCAAAAGGGTGTTATAgtgagtagtt ... atcatctcagATATCGGACTGCCATCTGGGAAATCACTTTTTCAGATTCAAGCTGAGAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAACAAGACTTGGAAGTTCAGATCCAAAAGGGTGTTATAgtgagtagttctcatttcagttctgtctttgctgaacatcttctatacgttcttgcaaatttccttagcaagttcagattctcttgttttagtgaatgcgacattcaataacagatgacgtttactgttgttacctgtatattttgttaccttaccataataattttatcatctcag
- - - - - TGGAAG