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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttcatgcctactacttgtgaaactataattttcatcgacctcttatcttgatttaacagtttggtttttggtcttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G34160.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125154040|gb|EL184858.1|EL184858
EST:     ATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTA
genomic: ATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTA
EST: gi|164220887|gb|EL978069.1|EL978069
EST:     GCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: GCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055022|gb|DR350779.1|DR350779
EST:     CTGTTGATATTAAGGATGATGCAAG-G-ACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055028|gb|DR350785.1|DR350785
EST:     CTGTTGATATTAAGGATGRTGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055024|gb|DR350781.1|DR350781
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055023|gb|DR350780.1|DR350780
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055017|gb|DR350774.1|DR350774
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055013|gb|DR350770.1|DR350770
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|19877512|gb|AU238343.1|AU238343
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055027|gb|DR350784.1|DR350784
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055018|gb|DR350775.1|DR350775
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055016|gb|DR350773.1|DR350773
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055021|gb|DR350778.1|DR350778
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055030|gb|DR350787.1|DR350787
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|116440750|gb|EG483342.1|EG483342
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055020|gb|DR350777.1|DR350777
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055012|gb|DR350769.1|DR350769
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|125161398|gb|EL188536.1|EL188536
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCT
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCT
EST: gi|19797882|gb|AU229516.1|AU229516
EST:     CTGTTGATATTAAGGATTATGCAAGA-GACGTCCTGTGCAGAAAGCTAAG                         ATTTAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055011|gb|DR350768.1|DR350768
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATG
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATG
EST: gi|164132885|gb|ES061228.1|ES061228
EST:     GAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: GAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055029|gb|DR350786.1|DR350786
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATG
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATG
EST: gi|86055015|gb|DR350772.1|DR350772
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055026|gb|DR350783.1|DR350783
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|301501311|gb|HO206851.1|HO206851
EST:     CTGTTGATATTAAAGATGATGCGAGAAGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAATTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
EST: gi|86055014|gb|DR350771.1|DR350771
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATG
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATG
EST: gi|86055025|gb|DR350782.1|DR350782
EST:     CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG                         ATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA
genomic: CTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttc ... ggtcttgcagATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGgtagttcttcatgcctactacttgtgaaactataattttcatcgacctcttatcttgatttaacagtttggtttttggtcttgcag

- - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - AGAGGA