Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatctttatagtttcactattggagatttcacgactctaagctttgctttttttttgacaaatatggtttcttcttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG

Basic information

species Arabidopsis thaliana
transcript AT2G34160.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055022|gb|DR350779.1|DR350779
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAG-G-ACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055028|gb|DR350785.1|DR350785
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGRTGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055024|gb|DR350781.1|DR350781
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055023|gb|DR350780.1|DR350780
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055017|gb|DR350774.1|DR350774
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055013|gb|DR350770.1|DR350770
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|19877512|gb|AU238343.1|AU238343
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055027|gb|DR350784.1|DR350784
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055018|gb|DR350775.1|DR350775
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055016|gb|DR350773.1|DR350773
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055021|gb|DR350778.1|DR350778
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055030|gb|DR350787.1|DR350787
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|116440750|gb|EG483342.1|EG483342
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055020|gb|DR350777.1|DR350777
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055012|gb|DR350769.1|DR350769
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|125161398|gb|EL188536.1|EL188536
EST:     CTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: CTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|19797882|gb|AU229516.1|AU229516
EST:     AATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATTATGCAAGA-GACGTCCTG
genomic: AATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055011|gb|DR350768.1|DR350768
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055029|gb|DR350786.1|DR350786
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055015|gb|DR350772.1|DR350772
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055026|gb|DR350783.1|DR350783
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|301501311|gb|HO206851.1|HO206851
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTGTTGCTGTTGAGAAGA                         AGATCATGACTTCTACTGTTGATATTAAAGATGATGCGAGAAGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|124734915|gb|EH826317.1|EH826317
EST:     AAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: AAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055014|gb|DR350771.1|DR350771
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: gi|86055025|gb|DR350782.1|DR350782
EST:     TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA                         AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgactctaagctttgctttttttttgacaaatatggtttcttcttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG
                       ttttgac  putative branch site (score: 3)
 tttcttcttctatat  putative PPT
 tttttttttgacaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatctttatagtttcactattggagatttcacgactctaagctttgctttttttttgacaaatatggtttcttcttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA