1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCATTGCAACTGTTGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatctttatagtttcactattggagatttcacgactctaagctttgctttttttttgacaaatatggtttcttcttctatatag
species | Arabidopsis thaliana |
transcript | AT2G34160.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAG-G-ACGTCCTGEST: gi|86055028|gb|DR350785.1|DR350785
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGRTGCAAGAGGACGTCCTGEST: gi|86055024|gb|DR350781.1|DR350781
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055023|gb|DR350780.1|DR350780
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055017|gb|DR350774.1|DR350774
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055013|gb|DR350770.1|DR350770
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|19877512|gb|AU238343.1|AU238343
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055027|gb|DR350784.1|DR350784
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055018|gb|DR350775.1|DR350775
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055016|gb|DR350773.1|DR350773
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055021|gb|DR350778.1|DR350778
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055030|gb|DR350787.1|DR350787
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|116440750|gb|EG483342.1|EG483342
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055020|gb|DR350777.1|DR350777
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055012|gb|DR350769.1|DR350769
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|125161398|gb|EL188536.1|EL188536
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: CTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|19797882|gb|AU229516.1|AU229516
genomic: CTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: AATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATTATGCAAGA-GACGTCCTGEST: gi|86055011|gb|DR350768.1|DR350768
genomic: AATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055029|gb|DR350786.1|DR350786
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055015|gb|DR350772.1|DR350772
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055026|gb|DR350783.1|DR350783
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|301501311|gb|HO206851.1|HO206851
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTGTTGCTGTTGAGAAGA AGATCATGACTTCTACTGTTGATATTAAAGATGATGCGAGAAGACGTCCTGEST: gi|124734915|gb|EH826317.1|EH826317
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: AAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055014|gb|DR350771.1|DR350771
genomic: AAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGEST: gi|86055025|gb|DR350782.1|DR350782
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
EST: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGA AGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
genomic: TGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatct ... ttctatatagAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTGCAACTGTTGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAgtaagtatctttatagtttcactattggagatttcacgactctaagctttgctttttttttgacaaatatggtttcttcttctatatag
- - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT