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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacacatttgaaaatagtgatcaaaacatccaaagctcagctaaagaaaatatccaaagagaccaagctagcttgattaatctgcacgttgggttaacacaatttatgtgttttggctgcagAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAA

Basic information

species Arabidopsis thaliana
transcript AT2G33340.3
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116472804|gb|EG515396.1|EG515396
EST:     TTATCTCGGTATTGCTGCATCAGATATCAA                         AGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT
genomic: TTATCTCGGTATTGCTGCATCAGATATCAAgtgagtacac ... ttggctgcagAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT
EST: gi|124924079|gb|EL002208.1|EL002208
EST:     GAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAA                         AGTATACCAGA
genomic: GAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAAgtgagtacac ... ttggctgcagAGTATACCAGA
EST: gi|116444557|gb|EG487149.1|EG487149
EST:     GAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAA                         AGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT
genomic: GAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAAgtgagtacac ... ttggctgcagAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagcttgattaatctgcacgttgggttaacacaatttatgtgttttggctgcagAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAA
                        ggttaac  putative branch site (score: 3)
                          ttaacacaatttat  TA-rich tract