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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAGgtaaaaactatgggcttccaaactatatgacctattaaaattattaattgtgtacagtgttcttcattatagttttcatttttttggttgataatag

Basic information

species Arabidopsis thaliana
transcript AT2G33340.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 13
GAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAGgtaaaaactatgggcttccaaactatatgacctattaaaattattaattgtgtacagtgttcttcattatagttttcatttttttggttgataatag
    | ||  |||||  |||| ||||||||||| |||||||||||||| |||||||| ||  |  ||||| |||| ||||||||||| || |||||||||||||| | | |    |   | |||        | | ||  | | |  |  | | || |||| |||  |||  | ||   ||  |   ||| |  |||
TTCGGAAGGGTACACATCTGCGGCTTTTCATCCGGATGGTCTCATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGATTTGGGATGTAAAAAGTCAGgtaaacatttt---ttcttatact------tgtttaaagttcaattttaatattcaatgttattctctatgttcttaccttcctccattggttgtag

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 13
GAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAGgtaaaaactatgggcttccaaactatatgacctattaaaattattaattgtgtacagtgttcttcattatagttttcatttttttggttgataatag
   || ||  |||||  |||| ||||||||||| |||||||| ||||| |||||||| ||  |  ||||| |||| |||||||||||||| |||||||||||||| | | |    |   | ||| | |      ||||| ||  ||||| |    | | |||    ||||  | ||   ||  |   ||| |  |||
TTCTGAAGGGTACACTTCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGATTTGGGACGTAAAAAGTCAGgtaaacaattt---ttcttatactttgt------ttaaagtt--taatttt----aatattcactgttatgttcttaccttcctccattggttgtag

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 13
GAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAGgtaaaaactatgggcttccaaact--atatgacctattaaaattattaattgtgtacagtgttcttcattatagttttcatttttttggttgataatag
   ||  |  || ||  |||| || |||||||| |||||||| || || ||||| ||||| ||| |  || ||||||| |||||||| || ||||||||||||| || |   | ||| |||  |  |  ||   | ||| |||| || |||      | |  ||||  ||    || | | |||   |           
ATCTGAGGGCTATACATCTGCAGCCTTTCATCCTGATGGTCTAATCCTTGGAACGGGTACCTCTGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGgtaataaattatgtcttgcaagtttaacctgggttgttagaattctttatt-cacttatttctctttctt----ttgttaatttgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465161|gb|EG507753.1|EG507753
EST:     GAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAG                         GGCAAATGTGGGCTAAAGTTTGATGGGACACACTGGGGGAAGTTACAGCTA
genomic: GAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAGgtaaaaacta ... ttgataatagG-CAAATGTGG-CTAA-GTTTGATGG-ACACACTGGGG-AAGTTACAGCTA
EST: gi|86059921|gb|DR355678.1|DR355678
EST:     GAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAG                         GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCT
genomic: GAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAGgtaaaaacta ... ttgataatagGCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCT
EST: gi|116444557|gb|EG487149.1|EG487149
EST:     GAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAG                         GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCT
genomic: GAACCGGTACTTCTCAATCTGTTGTTAAGATTTGGGACGTTAAAAGTCAGgtaaaaacta ... ttgataatagGCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCT