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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAACCCTTGCTCCGCCCCACTCACAGGAAGTTCTACATCGACCTGAGTTCTCGTACTTCGTCGTATCACTCGTTCTTCCTACGATGAACTGTGCAAgtaaagctttcagtcgtctctctctattttttctcaatatgccgatttagggttttcttatggttgatgttggtggcggcactgtgttctttcag

Basic information

species Arabidopsis thaliana
transcript AT2G33340.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444558|gb|EG487150.1|EG487150
EST:     GTTCTCGTACTTCGTCGTATCACTCGTTCTTCCTACGATGAACTGTGCAA                         TTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCGACGAAGTCAGGATTAC
genomic: GTTCTCGTACTTCGTCGTATCACTCGTTCTTCCTACGATGAACTGTGCAAgtaaagcttt ... gttctttcagTTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCGACGAAGTCAGGATTAC
EST: gi|152034150|gb|BP868786.2|BP868786
EST:     GTTCTCGTACTTCGTCGTATCACTCGTTCTTCCTACGATGAACTGTGCAA                         TTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCGACCGAAGTCAGGATTA
genomic: GTTCTCGTACTTCGTCGTATCACTCGTTCTTCCTACGATGAACTGTGCAAgtaaagcttt ... gttctttcagTTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCGAC-GAAGTCAGGATTA
EST: gi|116472806|gb|EG515398.1|EG515398
EST:     GTTCTCGTACTTCGTCGTATCACTCGTTCTTCCTACGATGAACTGTGCAA                         TTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCGACGAAGTCAGGATTAC
genomic: GTTCTCGTACTTCGTCGTATCACTCGTTCTTCCTACGATGAACTGTGCAAgtaaagcttt ... gttctttcagTTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCGACGAAGTCAGGATTAC