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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtaatttgttggatgctctgttcgatttcacagaggatgtacatcaccaattgttcgatagttatctttttattactaaattagtgacttacctgcagACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAG

Basic information

species Arabidopsis thaliana
transcript AT2G33340.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125253072|gb|EL267157.1|EL267157
EST:     TAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCTGCTGACAAG                         ACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGT
genomic: TAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCTGCTGACAAGgtaatttcat ... ttacctgcagACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGT
EST: gi|116465161|gb|EG507753.1|EG507753
EST:     TAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCTGCTGACAAG                         ACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGTGGGTAT
genomic: TAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCTGCTGACAAGgtaatttcat ... ttacctgcagACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGTGGGTAT
EST: gi|86059921|gb|DR355678.1|DR355678
EST:     TAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCTGCTGACAAG                         ACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGTGGGTAT
genomic: TAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCTGCTGACAAGgtaatttcat ... ttacctgcagACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGTGGGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaccaattgttcgatagttatctttttattactaaattagtgacttacctgcagACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAG
                                            cttacct  CT-rich tract
              atagttatctttttat  TA-rich tract