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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttggctgtgtgtttctgtcaccagtttatgaggtgccatggtcaataaatttgttttatgcaccctagatttattttcctcactcatttcatcttttagtgtgtttagtctactgatgggactgttttaccttctgtttgcagCATGATTCTGCTTGTCGTGTGATTGCTAGACTTAAAAAAGAAAGAGACGAAGCACGCCAATTACTGGCCGAGGTTGAGAGACATATACCTGCGGCCCCTG

Basic information

species Arabidopsis thaliana
transcript AT2G33340.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444558|gb|EG487150.1|EG487150
EST:     AGCAACAACTACATACTGCAAGGCAAGAGCTAAGTCATGCCTTGTATCAG                         CATGATTCTGCTTGTCGTGTGATTGCTAGACTTAAAAAAGAAAGAGACGAA
genomic: AGCAACAACTACATACTGCAAGGCAAGAGCTAAGTCATGCCTTGTATCAGgtaattttgg ... ctgtttgcagCATGATTCTGCTTGTCGTGTGATTGCTAGACTTAAAAAAGAAAGAGACGAA
EST: gi|116472806|gb|EG515398.1|EG515398
EST:     AGCAACAACTACATACTGCAAGGCAAGAGCTAAGGCATGCCTTGTATCAG                         CATGATTCTGCTTGTCGTGTGATTGCTAGACTTAAAAAAGAAAGAGACGAA
genomic: AGCAACAACTACATACTGCAAGGCAAGAGCTAAGTCATGCCTTGTATCAGgtaattttgg ... ctgtttgcagCATGATTCTGCTTGTCGTGTGATTGCTAGACTTAAAAAAGAAAGAGACGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcttttagtgtgtttagtctactgatgggactgttttaccttctgtttgcagCATGATTCTGCTTGTCGTGTGATTGCTAGACTTAAAAAAGAAAGAGACGAAGCACGCCAATTACTGGCCGAGGTTGAGAGACATATACCTGCGGCCCCTG
                      tactgat  putative branch site (score: 2)
                                    ttttaccttctgttt  putative PPT
     ttttagt  TA-rich tract