Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTCCGTATCTGGCGGAATCCTGGGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAGgtaaggatgaatttgaggaactcttacagtccgttccatgttcttttaattcatatactttttgtgtaactttagttaatgatgctttattcag

Basic information

species Arabidopsis thaliana
transcript AT2G33340.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164218029|gb|ES024485.1|ES024485
EST:     GGATGGGAATTATGCTTGTGGGTATACATTGAATTGATCATTCTGCGGAG                         GTGCGAGCTGTAACTGTGCATCCCAC
genomic: GGATGGGAATTATGCTTGTGGGTATACATTGAA-TGATCATTCTGCGGAGgtaaggatga ... ctttattcagGTGCGAGCTGTAACTGTGCATCCCAC
EST: gi|116465161|gb|EG507753.1|EG507753
EST:     GGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAG                         GTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
genomic: GGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAGgtaaggatga ... ctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
EST: gi|125254740|gb|EL268825.1|EL268825
EST:     GATCATTCTGCGGAG                         GTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
genomic: GATCATTCTGCGGAGgtaaggatga ... ctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
EST: gi|86059921|gb|DR355678.1|DR355678
EST:     GGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAG                         GTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
genomic: GGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAGgtaaggatga ... ctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT