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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtaatctctttaactatttgatgcaaagtactgttgacgatatttgtttgagattttttaatgtaattgtcaattgtgtagATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGAACGTTCCAGAAT

Basic information

species Arabidopsis thaliana
transcript AT2G33340.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444558|gb|EG487150.1|EG487150
EST:     CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG                         ATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
genomic: CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgtagtgtaat ... aattgtgtagATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
EST: gi|152034150|gb|BP868786.2|BP868786
EST:     CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG                         ATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
genomic: CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgtagtgtaat ... aattgtgtagATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
EST: gi|116472806|gb|EG515398.1|EG515398
EST:     CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG                         ATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
genomic: CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgtagtgtaat ... aattgtgtagATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtactgttgacgatatttgtttgagattttttaatgtaattgtcaattgtgtagATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGAACGTTCCAGAAT
                             ttttaat  putative branch site (score: 3)
             atatttgtttgagatt  TA-rich tract