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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttttgggcaccaatgagatccgatctccagtgagagctcttttagattatcacgccacttggaaatgaatgatttcttctaaattattttcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG

Basic information

species Arabidopsis thaliana
transcript AT2G33340.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33340.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G26870.1 (Glycine max), 3'ss of exon 2
cttttgggcacc-aatgagatccgatctccagtgagagctcttttagat-tatcacgccacttggaaatgaatgatttcttctaaattattttcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG
      || ||  |||| | |   |       | |    |  | |  || || |       |||   ||||  | ||   |    |  | ||| || ||||||||||||||||||| ||  ||||||| ||||||||||| || ||||||||||| || ||||| || ||  ||
tgcggaggtacttaatgtgtttgaagtggtttttattatttgtctgtatatacctatattattgcttatgacagtttctgttctca--aatttgctatgtagGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGATGACATTGTACCAATCAAGACAGGCAAG

upper sequence: AT2G33340.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 2
---cttttgggcaccaatgagatccgatctccagtgagagctcttttagattatcacgccacttggaaatgaatgatt-tcttctaaattattttcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG
    |  |         |||  |    | |    ||        | || ||    |    | |||   ||||  | || | ||||  | |   || || ||||||||||||||||||| ||  ||||||| ||||||||||| || || |||||||| || ||||| || ||  ||
gcattacttaatgtgtttgaagtgatttttattatgtatatgtatgtatatacctatatta-ttgattatgacagtttgtgttctcgaat---ttgctatgtagGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGACGACATTGTACCAATCAAGACAGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444558|gb|EG487150.1|EG487150
EST:     CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCG                         GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
genomic: CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCGgtaagctttg ... tcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
EST: gi|152034150|gb|BP868786.2|BP868786
EST:     CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCG                         GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
genomic: -GAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCGgtaagctttg ... tcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
EST: gi|116472806|gb|EG515398.1|EG515398
EST:     CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCG                         GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
genomic: CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCGgtaagctttg ... tcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattatcacgccacttggaaatgaatgatttcttctaaattattttcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG
                                ttctaaa  putative branch site (score: 2)
                                       ttattttcctctgt  CT-rich tract
                  aaatgaatgatttctt  TA-rich tract