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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcattttcatatcagctaaaatccgtggttcggtgtatggttagagtacgagctcctttactcatgaaagcctttgtcatattccttgtttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTT

Basic information

species Arabidopsis thaliana
transcript AT2G33340.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33340.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 12
agcattttcatatcagctaaaatccgtggttcggtgtatggttagagtacgagctcctttactcatgaaagcctttgtcatattccttgttt-ttattcagGTATCAGATGATTCAAAGAAT---GTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTT
     ||| |  | | || |  |  ||  |  | | ||    |    | |   || |  |||  | |       |      |||  |  |   || |  |||| |  ||   ||||     |   | ||  |||||  |||| ||||||||||| |||||||||||||| |||||||| ||  |  ||||| |||| ||||   
ttttcttttaatttatcttatttaagtaata-gatttaaaccttttcttcagtcttccctacataagttctgaatcagacaattaatgatgagttgtgtagGTTTATGACACTTCAGGTTCTTCGGAAGGGTACACATCTGCGGCTTTTCATCCGGATGGTCTCATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465161|gb|EG507753.1|EG507753
EST:     ATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTGCACAG                         GTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCC
genomic: ATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTGCACAGgtccctaaac ... ttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCC
EST: gi|86059921|gb|DR355678.1|DR355678
EST:     ATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTGCACAG                         GTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCC
genomic: ATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTGCACAGgtccctaaac ... ttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCC
EST: gi|125209236|gb|EL224190.1|EL224190
EST:     ACGATCTGTCCTCTGGCTCATGCCTTGCACAG                         GTATCAGATGATCCAAAGAATGTAGATTACACGGCTG
genomic: ACGATCTGTCCTCTGGCTCATGCCTTGCACAGgtccctaaac ... ttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtacgagctcctttactcatgaaagcctttgtcatattccttgtttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTT
                                     ttccttgtttttattc  CT-rich tract
                                         ttgtttttatt  TA-rich tract