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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtactttacccaaagtatctaacatcgcacctataagatattcatctcatgaattctgcagcgtatttgaatttttatgtaaactgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G32950.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 3'ss of exon 8
---gtgagtactttacccaaagtatctaacatcgcacctataagatattcatctcatgaattctgcagcgtatttgaatttttatgtaaactgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
    |   | || |   | |    ||      | ||| | |   || |||    | || ||||   |   |||||     | |||  || ||     ||||| | |||||||||||||| || |||||  | || ||||||||||| ||||| ||||||||||| || ||||| |||||||| ||||| || ||||||
gtatttcttgctctgttccacagttcattttgcacacttgtgttattttctgaacttggattc---atgatattta----tgtattcaatcttctttagAGTGTGATGGAGTATGAAGAACATGAAAAGAGAGCATGGAGTGTTGATTTTTCTCGAACAGAACCCTCGATGCTAGTATCTGGGAGTGATGATTGCAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
gtgagtactttacccaaagtatctaacatcgcac-ctataa--gatatt--catctcatgaattctgcagcgtatttgaatttttatgtaaactga---ggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
          || |||   ||| | |||   ||  ||  ||  |  |||    | | || | |    | | |   |    ||||| ||||   |||   |  ||||| | ||||| ||||||||||| || ||| | || ||||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| ||||||
---------gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
gtgagtactttacccaaagtatctaacatcgcacctataagatattcatctcatgaattctgcagcgtatttgaatttttatgta---aactgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
    ||| |  || |    |||   |||   ||    |   ||     | |  | | |    | | |   |    ||| | ||||     |   |  ||||| | ||||| ||||||||||| || ||  | || ||||||||||| ||||| || |||||  | |||||||| |||||||| ||||| || ||||||
----gta-tccactctc--tattcgacagttcattc-tgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 8
------------------------------------gtgagtacttt----acccaaagtatctaacatcgcacctataag-atattcat-ctcatgaattctgcagcgtatttg-----aatttttatgtaaactgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
                                     | ||  ||||    | |   | |   ||| || |     ||    || | | | || | |  |||| |||  |||||         | | || | ||||  |||||||| | ||||| ||||||||||| ||||| ||||| |||||||| ||||||||| ||||||| || || ||||||||||||||||| || ||||| |||
gtaaatgttgaattcaaatggtcagtttgttcttgtatcagatctttgggtatcttcattcattaatattgttttgattgtcatgtgcttgcttaagttttctacagattatttacgcatggctatcattttaactttggcagAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTAGACTTTTCAAGAACAGATCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 8
------------------------------------gtgagtacttt----acccaaagtatctaacatcgcacctataagatattcat-ctcatgaattctgcagcgtatttg-----aatttttatgtaaactgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
                                     | ||  ||||    | |  || |   ||| ||       ||   || | | | || |    |||| |||  |||||         | | || |   ||   ||||||| | ||||| ||||||||||| ||||| ||||| ||||||||||| |||||| ||||||| || || ||||||||||||||||| || ||||| |||
gtaaatgttgaattcaaatggtcagtttgttcttgtatcagctctttgggtatcttaattcattaatatttttttaatgtcatgtgcttgcttaaattttctacagattatttactcatggctatcatttttccttttgcagAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 8
gtgagtactttacccaaagtat-ctaacatcgc-acctataagatattcatctcatgaattctgca-gcgtatttgaatttttatgtaaac----tgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
    || ||||     ||  || ||    |||| ||  |  | | |||  ||     |  | |  |    ||| |  || |     ||||     |    |||||| | ||||| ||||||||||| |||||||| || ||||||||||| |||||||| |||||||| |||| |||||||||||| ||||| || || |||
---ggtcctttgaatgaaaaattctgggctcgccactgactatagatttgtccttgtatatatatatatatatatatatatgctaataaatgttttttatcagAGTGTGATGGAATATGAAGAGCATGAAAAACGGGCATGGAGTGTTGATTTTTCACGCACAGAACCCTCAAGGCTTGTATCTGGCAGTGATGATTGTAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S25_325V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------------------------------------------------------------------------------------gtgagtactttacccaaagtatctaacat---cgcacc-tataagatattcatctcatg-aattctgcagcgtatttgaatttttatgtaaactgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
                                                                                         |||     || |  |  | | |  ||  |   ||||     |  ||| | |   |  |  || | |    | | ||    ||   ||  | |      |||||| | ||||||||||| |||||||| || ||||||||||||||||||||||| || || || || |||||||| || ||||| ||||| ||  |||||
gtaggcttgaaaatttggccacttaacataggttcgttgatgatgtccttaattgtggttccagaatgagcgacatatagctttacaatgtgtcatattcattcggatttttaaattttgacgcattgcttcggatgtacggtttgtctaaatatttgacatgttctgcttgccat-catatattaccagAGTGTCATGGAGTATGAGGAGCACGAGAAGCGTGCCTGGAGTGTTGACTTTTCCCGGACGGATCCTTCAATGCTGGTCTCTGGAAGTGATGATGGCAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S81_234V6.1 (Physcomitrella patens), 3'ss of exon 8
-----gtgagtactttacccaaagtatctaacatcgcacctataagatattcatctcatgaattctgcagcgtatttgaatttttatgtaaactgag---gcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG-
      | |    | | ||  |     ||| | | |   || | |  | ||||  | ||  | | | |  | | || | ||    |   |   |      ||||||| ||||||| ||||| ||||| ||    ||||| |||||||| ||||| || || ||||||||||| ||||| || ||||| ||||||||  | ||  
aatgcattaaacttctgccgtagagtcctatcctagtcgctttca--tgttcaggttatctaatgttc--cattttcgcataccgaccgatttttgtcttgcagAGTGTTATGGAATATGAGGAGCATGAGCGGCGTGCTTGGAGTGTCGACTTCTCCCGTACAGAACCATCCATGCTGGTTTCTGGAAGTGACGATGGAAAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S37_28V6.1 (Physcomitrella patens), 3'ss of exon 8
--------------------------------------------------------------------------------------------gtgagt-actttacccaaagtatctaacatcgcacctataagatattcatctcatgaattctgcag-cgtat-ttgaatttttatgt----aaactga----ggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
                                                                                            || | | | |||     | |||| ||||     |  || |  || |  |    ||     |||||  | ||| ||||  | || ||     ||| |      | |||||  || | ||||| || |||||||| || || |||||||||||||| |||||  | | ||| ||||||||| | || ||||| ||||||||| |||||
gtaaatcggagtggattattggcacagcacaggactgttgatgttccaacttgggttcgtaccagaaatatacatgtatgtctttgcaatgcgtcaatcattttcatttacgtatataac----tatatacattatttcaagtgtatagtccctgcaaacatatgttgacatgttctgctcgcaaattaccattgccagAGCGTTGTCGAGTACGAGGAGCACGAGAAGCGCGCCTGGAGTGTTGATTTTTCCTGTATAGATCCATCAATGATGGTCTCTGGAAGTGACGACGGCAAG

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S264_64V6.1 (Physcomitrella patens), 3'ss of exon 9
-----------------------------------------------gtgagtactttacccaaagtatc----taacatcgcacctataagatattcatctcatgaatt-------ctgcagcgtatttgaattttta------tgt----aaactgag--gcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
                                                |  ||  | ||    | ||       ||  || |    | |||||   | || | ||  |||        |  ||  |  || | ||| ||      |||    || | | |  | ||||  | ||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| || ||  | |||||||| || || ||||| ||| |||||
gttagttgtcattctcattctttatgttaagttgtaggtacacatctttttgttttgtaattgaggttctgtgttattattgtgtatgtaagaatgtgattttatacattattttagttctagtatgcttaagtttataatcagctgtcctcaatcggtgttgtagAGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattcatctcatgaattctgcagcgtatttgaatttttatgtaaactgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG
                          tatttgaatttttatg  TA-rich tract