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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGCAGTTTCCTATGTTAAATTTTTGTCCAACAACGAGCTCGCTTCTGCGTCCACAGATAGCACACTACGCTTATGGGATGTCAAAGACAACTTGCCAgttagattactgcccgagccaatcttgcagattcagtcaaaaagaaaaacttgtcttgactatgttgttcaattttacttttcag

Basic information

species Arabidopsis thaliana
transcript AT2G32950.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 11
GAAAGCAGTTTCCTATGTTAAATTTTTGTCCAACAACGAGCTCGCTTCTGCGTCCACAGATAGCACACTACGCTTATGGGATGTCAAAGACAACTTGCCAgttagattactgcccgagccaatcttgcagattcagtcaaaaagaaaaacttgtcttgactatgttgttcaattttacttttcag------------------
|||||| ||||| ||||| || ||  |||||| ||| ||||| || ||||| || || ||||||||| |||| ||||||||||||||||| || |  || ||  |  |              |||||||  | || | |  ||   |   || |      || |  | |     ||| |  | |                   
GAAAGCTGTTTCTTATGTGAAGTTCCTGTCCACCAATGAGCTTGCGTCTGCATCAACTGATAGCACATTACGGTTATGGGATGTCAAAGAAAATTGCCCTgtatg--tgtcattgagatttttcttgcac-tgcaattatgaaattatgtttttgccttttaagcagctatgacttattagtaaaaagtgatgttttaggata

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G104920_T03 (Zea mays), 5'ss of exon 11
GAAAGCAGTTTCCTATGTTAAATTTTTGTCCAACAACGAGCTCGCTTCTGCGTCCACAGATAGCACACTACGCTTATGGGATGTCAAAGACAACTTGCCAgttagattactgcccgagccaatcttgcagattcagtcaaaaagaaaaacttgtcttgactatgttgttcaattttacttttcag-------------------
||||||||| || ||||| ||||| || || ||||| ||||| || ||||| || |||||||||||| ||||||||||||||||||| || ||||  || ||  | |  ||  | | |  | | | |   ||  |   | | | | | |  | | |  | ||| |    || | || || |  ||                   
GAAAGCAGTATCATATGTGAAATTCTTATCTAACAATGAGCTTGCGTCTGCATCAACAGATAGCACATTACGCTTATGGGATGTCAAGGATAACTGCCCGgtatgct--ctttctgtgatagtgt-gtgtatatatatatatatatatatatatatata-tatatatgccattcttcctctggagcttttgttgcaaaggaaag

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G126795_T02 (Zea mays), 5'ss of exon 13
GAAAGCAGTTTCCTATGTTAAATTTTTGTCCAACAACGAGCTCGCTTCTGCGTCCACAGATAGCACACTACGCTTATGGGATGTCAAAGACAACTTGCCAgttagattactgcccgagccaatcttgcagattcagtcaaaaagaaaaacttgtcttgactatgttgttcaattttacttt--tcag---------------------
||||||||| || ||||| ||||| || || ||||| ||||| || ||||| || |||||||||||  |||| |||||||||||||| || || ||||| ||  | |  ||  | |||  | ||        || |||  |||  |||| | || ||  || | | ||  | |  |||  |  | |                      
GAAAGCAGTATCGTATGTCAAATTCTTATCTAACAATGAGCTTGCATCTGCATCAACAGATAGCACGTTACGTTTATGGGATGTCAAGGATAATTTGCCGgtatgct--ctttctgagatactccc------tccgtcctaaattaaaattcgttttatctttttagtagattcatacaataattaatatatgtgttctatattatat

upper sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 11
GAAAGCAGTTTCCTATGTTAAATTTTTGTCCAACAACGAGCTCGCTTCTGCGTCCACAGATAGCACACTACGCTTATGGGATGTCAAAGACAACTTGCCAgttagattactgcccgagccaatcttgcagattcagtcaaaaagaaaaacttgt--cttgactatgttgtt-caattttacttttcag-------------
|||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| || ||||| |||||| |  | || |||||||| || || || |||||||| |  | |   |  ||   | | ||   | |||     | ||  |   ||| |  |   | |||| | |   || ||   ||| |               
GAAAGCTGTTTCATATGTGAAATTCTTGTCAAACAATGAGCTCGCTTCTGCTTCTACAGACAGCACATTGAGGTTGTGGGATGTGAAGGAAAATTTGCCAgt-aagtaaagtctagatatagttttttggtttcttcttacaattatggcttttaaccacattatgctttcataacttaggtttcctaagaatgagaagtc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163992652|gb|ES037985.1|ES037985
EST:     GGGATGTCAAAGACAACTTACCA                         GTTCGAACATTCAGAGGACATACTAACGAGAAGAACTTTGTTGGGTCTCAC
genomic: GGGATGTCAAAGACAACTTGCCAgttagattac ... tacttttcagGTTCGAACATTCAGAGGACATACTAACGAGAAGAACTTTGT-GGGTCTCAC
EST: gi|164169040|gb|ES087248.1|ES087248
EST:     GGGATGTCAAAGACAACTTACCA                         GTTCGAACATTCAGAGGACATACTAACGAGAAGAACTTTGTGGGTCTCACA
genomic: GGGATGTCAAAGACAACTTGCCAgttagattac ... tacttttcagGTTCGAACATTCAGAGGACATACTAACGAGAAGAACTTTGTGGGTCTCACA