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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaggagtgactatcccttttcaatcggtctagccgtacataaagagtgttttcgaattagttggggttttaattgcactctttattcacagTCGTCTAAGAGTTATAGCAGAAATCCGGCATGGGGATATATTTCATTCAGCCAACATTGTATCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G32950.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 5
----------gtagaggagtgactatcccttttcaatcggtctagccgtacataaagagtgttttcgaattagttggggttttaattgcactctttattcacagTCGTCTAAGAGTTATAGCAGAAATCCGGCATGGGGATATATTTCATTCAGCCAACATTGTATCAAG
           ||   |||| ||      |  |   || ||       |    |   ||   | |  | |||  |      ||  ||||    |||    |||| ||  | ||||| || |||||| |  ||||||||||||||||||||||||| || || || |||||
attggggttcttaacagagttacaggtaatagt--gtcagttatttttttttgagtaagcaatatacagttatctccaaccttt-ttgcttcatttgaa-acagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acataaagagtgttttcgaattagttggggttttaattgcactctttattcacagTCGTCTAAGAGTTATAGCAGAAATCCGGCATGGGGATATATTTCATTCAGCCAACATTGTATCAAG
                              ttttaat  putative branch site (score: 3)
                                         ctctttattc  putative PPT
                              ttttaatt  TA-rich tract