Sequence
atgc intronic sequence ATGC exonic sequence...gaagaatataaatcaaagctaatcaaatttttggttttaattttctgttttatccaatggaccacgctgaactgattgattatcggctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G32950.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 7
-----gaagaatataaatcaaagctaatcaaatttttggttttaattttctgttttatccaatggaccacgctgaactgattgattatcggctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA
| | | ||| | | |||| || | || || | || || ||| | || | | ||| ||| | | |||||| |||||||| |||||||| ||||| || ||||| ||||||||||||| || || || |||||||||||||||||||||||||| || || ||||| |
attaaaattagtgtaagggttcaccctttaaatgtt--gcttaaactaatagtaataggttatgaat-acaaagtaaccattccctat--gttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 7
gaagaatataaatcaaagctaatcaaatttttggttttaattttctgttttatccaatggaccacg---ctgaactgattgattatcg-gctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA
|| || | | | |||| || | || || | | || || ||| | | | || | | | | | | ||| || |||||||| |||||||| ||||| || ||||| ||||||||||||| || || || |||||||||||||||||||||||||| ||| || ||||| |
--agtgtaagggtgttcaccctttaaatgtt--gcttaaactattagtaatacattatgaaatatgaatacaaagtaaccattccccatgttaataccttccagGTTGTGAATGAACCTACAGATGCTCACTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATATGCTAAGAATCAAA
upper sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 7
gaagaatataaatcaaagctaatca-aatttttggttttaattttctgttttatccaatggaccac-gctgaactgattgat-tatcggctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA
| | ||| | | ||| ||| || || | || | | || | ||| | | | |||||| | | || ||||| |||||||| ||||||| ||||| ||||| ||||| ||||||||||||| ||||| || ||||||||||||||||||||||| ||| | || ||||| |
tgcttagcttggtcata--tggtcacaataactgattattatagtaaaata-attttgtctaccgctggtttgttgattgttgccttttctctcactttccagGTTGTGAATGAACGTGCAGAAATGCACTGTCCTGTTGTGGAGATGTCCACTCGATCCAAACTTAGTTGCTTGAGTTGGAACAAGTGTACTAAGAATCATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttttatccaatggaccacgctgaactgattgattatcggctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA
ctacttttc CT-rich tract
attgattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagaatataaatcaaagctaatcaaatttttggttttaattttctgttttatccaatggaccacgctgaactgattgattatcggctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA
gaagaat
- - - - - aatcaaa
- - - - - - - - - - - - - -tttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacgct