Sequence
atgc intronic sequence ATGC exonic sequenceCAGAGGACATACTAACGAGAAGAACTTTGTGGGTCTCACAGTGAACAGCGAGTATCTCGCCTGTGGAAGCGAGACAAACGAAGTATATGTATATCACAAGgttcacaaatccgaaacctctgctctcaactttagcatttttcattcatgattcacagattttcaacctgtcgttgctcaagtattttaaaatgtgaatgatgcgatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G32950.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ30221 (Selaginella moellendorffii), 5'ss of exon 11
CAGAGGACATACTAACGAGAAGAACTTTGTGGGTCTCACAGTGAACAGCGAGTATCTCGCCTGTGGAAGCGAGACAAACGAAGTATATGTATATCACAAGgttcacaaatccgaaacctctgctctcaactttagcatttttcattcatgattcacagattttcaacctgtcgttgctcaagtattttaaaatgtgaatgatgcgatgcag
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TAGAGGTCATACGAACGAAAAGAACTTTGTCGGGCTGTCTGTCACTTCTGATTACATCGCCTGTGGGAGCGAGACAAACGAGGTCTATGTTTACCACAAGgt-----------aagcctggtttttagagct--gcattgtcaagacgaagtagaacaaatctcaa--tggtgatgtttcag-----------------------------
upper sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ24914 (Selaginella moellendorffii), 5'ss of exon 11
CAGAGGACATACTAACGAGAAGAACTTTGTGGGTCTCACAGTGAACAGCGAGTATCTCGCCTGTGGAAGCGAGACAAACGAAGTATATGTATATCACAAGgttcacaaatccgaaacctctgctctcaactttagcatttttcattcatgattcacagattttcaacctgtcgttgctcaagtattttaaaatgtgaatgatgcgatgcag
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---------TACGAACGAAAAGAACTTTGTCGGGCTGTCTGTCACTTCTGATTACATCGCCTGTGGGAGCGAGACAAACGAGGTCTATGTTTACCACAAGGT------------AAGCCCGgtttttagagct-gcattgtcaagacgaagtagaacaaatctcaatg-------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124873639|gb|EH955284.1|EH955284EST: CGAGACAAACGAAGTATATGTATATCACAAG GAAATCACGAGACCCGTGACATCGCACAGATTTGGATCGCCAGACATGGAC
genomic: CGAGACAAACGAAGTATATGTATATCACAAGgttcacaaat ... tgcgatgcagGAAATCACGAGACCCGTGACATCGCACAGATTTGGATCGCCAGACATGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGAGGACATACTAACGAGAAGAACTTTGTGGGTCTCACAGTGAACAGCGAGTATCTCGCCTGTGGAAGCGAGACAAACGAAGTATATGTATATCACAAGgttcacaaatccgaaacctctgctctcaactttagcatttttcattcatgattcacagattttcaacctgtcgttgctcaagtattttaaaatgtgaatgatgcgatgcag
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