1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaatccctaattgctactaatgtgaattatcctcgacagaaaatataagaatgttgttgttcaagatgttttaagtttctggtcctatctcaacgtagGTATTGATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGACGAAGATGACTTACGCGCAAGTAGCTGTGTATGGTTTCAGTGACAAGG
species | Arabidopsis thaliana |
transcript | AT2G29080.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGGAGGCCGTGCAGCTGAGCAG GTATTGATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGEST: gi|86058635|gb|DR354392.1|DR354392
genomic: CGGAGGCCGTGCAGCTGAGCAGgtaaaatccc ... ctcaacgtagGTATTGATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTG
EST: AACTCTTTGACATGACTTGCATGACTCTCGGAGGCCGTGCAGCTGAGCAG GTATTGATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTG
genomic: AACTCTTTGACATGACTTGCATGACTCTCGGAGGCCGTGCAGCTGAGCAGgtaaaatccc ... ctcaacgtagGTATTGATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTG
tataagaatgttgttgttcaagatgttttaagtttctggtcctatctcaacgtagGTATTGATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGACGAAGATGACTTACGCGCAAGTAGCTGTGTATGGTTTCAGTGACAAGG
tcctatctc CT-rich tract
ttttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatccctaattgctactaatgtgaattatcctcgacagaaaatataagaatgttgttgttcaagatgttttaagtttctggtcctatctcaacgtagGTATTGATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGACGAAGATGACTTACGCGCAAGTAGCTGTGTATGGTTTCAGTGACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG