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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTATAAACTATTATGCGAACTTAGTTTTGTTCTTTGTGATTTTGTATGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAGgttagttgttattttcatttcattgattccttctcagattcgttctcaatttgttttttttttttgcttacctgatttttgtttatatgtgaaattag

Basic information

species Arabidopsis thaliana
transcript AT2G29080.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830890|gb|CK120574.1|CK120574
EST:     TGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAG                         GGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCG
genomic: TGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAGgttagttgtt ... gtgaaattagGGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCG
EST: gi|116401678|gb|EG444270.1|EG444270
EST:     TGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAG                         GGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCG
genomic: TGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAGgttagttgtt ... gtgaaattagGGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCG