1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagttgttattttcatttcattgattccttctcagattcgttctcaatttgttttttttttttgcttacctgatttttgtttatatgtgaaattagGGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCGCCGGGACTTGAGGCGGCGTCTGTGAATGAAGTGGAAGGTGGATTAGGGT
species | Arabidopsis thaliana |
transcript | AT2G29080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAG GGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCGEST: gi|116401678|gb|EG444270.1|EG444270
genomic: TGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAGgttagttgtt ... gtgaaattagGGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCG
EST: TGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAG GGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCG
genomic: TGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAGgttagttgtt ... gtgaaattagGGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCG
tctcaatttgttttttttttttgcttacctgatttttgtttatatgtgaaattagGGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCGCCGGGACTTGAGGCGGCGTCTGTGAATGAAGTGGAAGGTGGATTAGGGT
atttttgtttatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttgttattttcatttcattgattccttctcagattcgttctcaatttgttttttttttttgcttacctgatttttgtttatatgtgaaattagGGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCGCCGGGACTTGAGGCGGCGTCTGTGAATGAAGTGGAAGGTGGATTAGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA