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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacaacatagattttgaagatacttttcttattatgagacctgttggtgctactgaaggattctaataattgtatatgttattgttgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACCGATTCCAAAATTTGCTAATTCCTCTACTAGCTCTTGCTGTATTCTTTTC

Basic information

species Arabidopsis thaliana
transcript AT2G29080.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477683|gb|EG520275.1|EG520275
EST:     TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAG                         AGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
genomic: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGgtgaacaaca ... tgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
EST: gi|47830890|gb|CK120574.1|CK120574
EST:     TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAG                         AGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
genomic: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGgtgaacaaca ... tgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
EST: gi|164232796|gb|ES021666.1|ES021666
EST:     GTGATCAGAAATCAGAGCATAAAG                         AGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTC
genomic: GTGATCAGAAATCAGAGCATAAAGgtgaacaaca ... tgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTC
EST: gi|116401678|gb|EG444270.1|EG444270
EST:     TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAG                         AGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
genomic: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGgtgaacaaca ... tgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttggtgctactgaaggattctaataattgtatatgttattgttgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACCGATTCCAAAATTTGCTAATTCCTCTACTAGCTCTTGCTGTATTCTTTTC
                    ttctaat  putative branch site (score: 2)
                   attctaataattgtat  TA-rich tract