1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTATGAGAACTATTTTCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGgtgaacaacatagattttgaagatacttttcttattatgagacctgttggtgctactgaaggattctaataattgtatatgttattgttgcaatacag
species | Arabidopsis thaliana |
transcript | AT2G29080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAG AGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACCEST: gi|47830890|gb|CK120574.1|CK120574
genomic: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGgtgaacaaca ... tgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
EST: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAG AGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACCEST: gi|164232796|gb|ES021666.1|ES021666
genomic: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGgtgaacaaca ... tgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
EST: GTGATCAGAAATCAGAGCATAAAG AGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCEST: gi|116401678|gb|EG444270.1|EG444270
genomic: GTGATCAGAAATCAGAGCATAAAGgtgaacaaca ... tgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTC
EST: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAG AGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
genomic: TCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGgtgaacaaca ... tgcaatacagAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATGAGAACTATTTTCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGgtgaacaacatagattttgaagatacttttcttattatgagacctgttggtgctactgaaggattctaataattgtatatgttattgttgcaatacag
- - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA