Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAAGGCCATAAGCCAAACGCAGTTGCTACAAACACTTGGGGAGCGGTTAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtactaaccaaaaataataagtaaaacatgttaatgtccacgagtgtttgaataaagttaatagttgatataagttattttttgtttcttgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G04170.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389928|gb|EG432520.1|EG432520
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCACCCCCGCACAAATATATT                         CTGCAGCTTGGTCCCCTACTCGAAGCGATTATGGTGTGGGAGTTACCACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116389930|gb|EG432522.1|EG432522
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGGTGTGGGAGTTAACACT
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGG-TGTGGGAGTTAACACT
EST: gi|116387851|gb|EG430443.1|EG430443
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCGCAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGGTGTGGGGAGTTAACAC
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGG-TGTGGG-AGTTAACAC
EST: gi|116389932|gb|EG432524.1|EG432524
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTA
EST: gi|116389946|gb|EG432538.1|EG432538
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116389920|gb|EG432512.1|EG432512
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116387848|gb|EG430440.1|EG430440
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGGGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116383980|gb|EG426572.1|EG426572
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCCCGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116389945|gb|EG432537.1|EG432537
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116389935|gb|EG432527.1|EG432527
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGGTGTGGGAGTTAACACT
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGG-TGTGGGAGTTAACACT
EST: gi|116387892|gb|EG430484.1|EG430484
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116389921|gb|EG432513.1|EG432513
EST:     TAATTTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116389934|gb|EG432526.1|EG432526
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116383981|gb|EG426573.1|EG426573
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATT
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATT
EST: gi|116387896|gb|EG430488.1|EG430488
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAAC-ACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGAT
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGAT
EST: gi|116389949|gb|EG432541.1|EG432541
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116389947|gb|EG432539.1|EG432539
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116387897|gb|EG430489.1|EG430489
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116387890|gb|EG430482.1|EG430482
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116387872|gb|EG430464.1|EG430464
EST:     TAATCTGCGGTTAAAGA-TCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGGAGT-AACACT
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGG-AGTTAACACT
EST: gi|116387901|gb|EG430493.1|EG430493
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA
EST: gi|116387911|gb|EG430503.1|EG430503
EST:     TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATT                         CTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGGTAACACTA
genomic: TAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtacta ... tgttttgcagCTGCAGCTTGGTACCCTACTCGAAGCGATTATGGTGTGGGAGTTAACACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCAAGGCCATAAGCCAAACGCAGTTGCTACAAACACTTGGGGAGCGGTTAATCTGCGGTTAAAGAATCAACGAAGCTCCAACCACGCACAAATATATTgtaagtactaaccaaaaataataagtaaaacatgttaatgtccacgagtgtttgaataaagttaatagttgatataagttattttttgtttcttgttttgcag

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