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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGAAGAGACAGAATCTCTTCCAAAAGGCTGGGAAGTCAATGTTGAACTCAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgtagatttcaaagatttgtcttaacattttctatgaaccgatgagttgattgtgacttgcatgtttttgcaaaattgtggattgtag

Basic information

species Arabidopsis thaliana
transcript AT2G04170.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389930|gb|EG432522.1|EG432522
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387846|gb|EG430438.1|EG430438
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387851|gb|EG430443.1|EG430443
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387839|gb|EG430431.1|EG430431
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387835|gb|EG430427.1|EG430427
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389932|gb|EG432524.1|EG432524
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGGTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389946|gb|EG432538.1|EG432538
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389920|gb|EG432512.1|EG432512
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389961|gb|EG432553.1|EG432553
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389945|gb|EG432537.1|EG432537
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389935|gb|EG432527.1|EG432527
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGACACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387833|gb|EG430425.1|EG430425
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116383981|gb|EG426573.1|EG426573
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389922|gb|EG432514.1|EG432514
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGA
EST: gi|116383985|gb|EG426577.1|EG426577
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389964|gb|EG432556.1|EG432556
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387896|gb|EG430488.1|EG430488
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389949|gb|EG432541.1|EG432541
EST:     AGCAACGCAAGTATATGATTGTTAAAG                         ATGGAATAGCGAAACGATGCAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: AGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389924|gb|EG432516.1|EG432516
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389947|gb|EG432539.1|EG432539
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGCGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387872|gb|EG430464.1|EG430464
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCG-AAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387901|gb|EG430493.1|EG430493
EST:     GCAACTCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: GCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389941|gb|EG432533.1|EG432533
EST:     CAAACTCTTTGTCTACCATGGGAAGCAACGCACGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389966|gb|EG432558.1|EG432558
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387911|gb|EG430503.1|EG430503
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116387841|gb|EG430433.1|EG430433
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: gi|116389967|gb|EG432559.1|EG432559
EST:     CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG                         ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGAAGAGACAGAATCTCTTCCAAAAGGCTGGGAAGTCAATGTTGAACTCAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgtagatttcaaagatttgtcttaacattttctatgaaccgatgagttgattgtgacttgcatgtttttgcaaaattgtggattgtag

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