Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTCCAAACAATGTTTTCACTTGGAAGATACTTCATTTCTCTAACTTGGAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagtttttttttggtaaccatatcatttagaccttattccggaaaaaatcataaagattgcacccattatgtgaatttttttgccgtggtcaagtataataacggtttttggttgatgtataatcag

Basic information

species Arabidopsis thaliana
transcript AT2G04170.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389928|gb|EG432520.1|EG432520
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTACCCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389930|gb|EG432522.1|EG432522
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116387851|gb|EG430443.1|EG430443
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389932|gb|EG432524.1|EG432524
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389946|gb|EG432538.1|EG432538
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389920|gb|EG432512.1|EG432512
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116383980|gb|EG426572.1|EG426572
EST:     TTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: TTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389945|gb|EG432537.1|EG432537
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389935|gb|EG432527.1|EG432527
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389934|gb|EG432526.1|EG432526
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116383981|gb|EG426573.1|EG426573
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116383985|gb|EG426577.1|EG426577
EST:     AAGATAAATTCTATTACTCTGATGATTTTCTTGGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTAC
genomic: AAGATAAATTCTATTACTCTGATGATTTTCTTG-TTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTAC
EST: gi|116387896|gb|EG430488.1|EG430488
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389949|gb|EG432541.1|EG432541
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389947|gb|EG432539.1|EG432539
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116387897|gb|EG430489.1|EG430489
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116387890|gb|EG430482.1|EG430482
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116387872|gb|EG430464.1|EG430464
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116387901|gb|EG430493.1|EG430493
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389941|gb|EG432533.1|EG432533
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCC
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCC
EST: gi|116389923|gb|EG432515.1|EG432515
EST:     TCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: TCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116387911|gb|EG430503.1|EG430503
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCTCCAAACAATGTTTTCACTTGGAAGATACTTCATTTCTCTAACTTGGAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagtttttttttggtaaccatatcatttagaccttattccggaaaaaatcataaagattgcacccattatgtgaatttttttgccgtggtcaagtataataacggtttttggttgatgtataatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA