Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCATCAAACAAGATACTGACAATAACAAGTTTCTCCGTGATCAAAGGGAGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaactacacttccactgtttttttcacttttcagatatatatttgagtttattttgatgtgaacataaaaatgaatcag

Basic information

species Arabidopsis thaliana
transcript AT2G04170.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389930|gb|EG432522.1|EG432522
EST:     TTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: TTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116387846|gb|EG430438.1|EG430438
EST:     TGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: TGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116387851|gb|EG430443.1|EG430443
EST:     TGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: TGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116387839|gb|EG430431.1|EG430431
EST:     AGAGGAGAACCCTACGAATCCTCGGTCTTTAAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116387835|gb|EG430427.1|EG430427
EST:     AGAGGAGAACCCTACGAATCCTCGGTCTTTAAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116389946|gb|EG432538.1|EG432538
EST:     TCTTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: TCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116389920|gb|EG432512.1|EG432512
EST:     TTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: TTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116389961|gb|EG432553.1|EG432553
EST:     GAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: GAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116389935|gb|EG432527.1|EG432527
EST:     TTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTAGGAAATAACC
genomic: TTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGT-GGAAATAACC
EST: gi|116387833|gb|EG430425.1|EG430425
EST:     AGAGGAGAACCCTGCGAATCCTCGGTCTTTAAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116389964|gb|EG432556.1|EG432556
EST:     AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116387896|gb|EG430488.1|EG430488
EST:     TTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: TTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116387834|gb|EG430426.1|EG430426
EST:     AGAGGAGAACCCTACGAATCCTCGGTCTTTAAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116389924|gb|EG432516.1|EG432516
EST:     GGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGAGTGGAAATAACC
genomic: GGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATG-GTGGAAATAACC
EST: gi|116389947|gb|EG432539.1|EG432539
EST:     TTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: TTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116387872|gb|EG430464.1|EG430464
EST:     GGTTAC-AATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: GGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116389966|gb|EG432558.1|EG432558
EST:     AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
EST: gi|116387841|gb|EG430433.1|EG430433
EST:     AGAGGAGAACCCTACGAATCCTCGGTCTTTAAGGCCGGTGGTTACAAATG                         GAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA
genomic: AGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaact ... aatgaatcagGAGATTAGTTTTGTATGTTAATGGTAATCAAAACGATGGTGGAAATAACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCATCAAACAAGATACTGACAATAACAAGTTTCTCCGTGATCAAAGGGAGAGGAGAACCCTACGAATCCTCGGTCTTTGAGGCCGGTGGTTACAAATGgtaaagaactacacttccactgtttttttcacttttcagatatatatttgagtttattttgatgtgaacataaaaatgaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA