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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGTCAAAGTTATTGAAGGCCATGGTACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGTGATCAAATCGTCGTTTGTGGGCTACAGgcaagtaaaaaacttatgatccagacccgaacaagtgatggcactgggtagacatagaacttttctaagtgatcatattttcttcctcatatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G76810.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os05g51500.1 (Oryza sativa), 5'ss of exon 6
TGAGGTCAAAGTTATTGAAGGCCATGGTACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGTGATCAAATCGTCGTTTGTGGGCTACAGgcaagtaaaaaacttatgatccagacccgaacaagtgatggcactgggtagacatagaacttttctaagtgatcatattttcttcctc-atatttcag---
 || ||||| ||| ||||||| |||||||| ||  |||||||||||||||| ||||||  |||||||||||| |||||||| || || |||||| | |||| |||  | |   || |  |          | || ||  |    |    | ||| ||  ||| |  ||||   |   |  ||||  || || |||  |   
GGAAGTCAAGGTTGTTGAAGGTCATGGTACTACAGTTGATGTTGTGTTGGTCAACGGTATACTCCATGAAGGAGATCAAATAGTTGTGTGTGGGATGCAGgtaag--agacgtttttcttt---------ataaatgcagtttttcaacaaacacag--cttattgaagttgccgcctgctcttgttctatgtttatgtag

upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G023418_T01 (Zea mays), 5'ss of exon 5
TGAGGTCAAAGTTATTGAAGGCCATGGTACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGTGATCAAATCGTCGTTTGTGGGCTACAGgcaagtaaaaaacttatgatccagacccgaacaagtgatggcactgg-gtagacatagaacttttctaagtgatcatattttcttcctcatatttcag
 || ||||| ||| |||||||||||||||| || ||||||||||| ||||| || |||  |||||||||||| |||||||| || ||||||||  | |||| |  |   |   || | ||  | |   |||   ||| |   | ||| | |||  |  ||  |  |||| || || | | || || |  |        
GGAAGTCAAGGTTGTTGAAGGCCATGGTACTACAATTGATGTTGTTTTGGTCAATGGTATACTCCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGgtagatgtta---ttttaatttatatttgaa---gtgctaaaattggagcagaacttcaagatgcctaa-tgttcttgtgtttttacatag-------

upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 7
TGAGGTCAAAGTTATTGAAGGCCATGGTACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGTGATCAAATCGTCGTTTGTGGGCTACAGgcaagtaaaaaacttat-gatccagacccgaacaagtgatggcactgggtagacatagaacttttctaagtgatcatattttcttcctcatatttcag
 |||||||| ||| | || |||||||| ||||| ||||||||||||||||| || ||||  || |||||||| ||||| || || ||||||||  | |||||||| |   ||  ||| | | | |     ||    | ||  |         || ||  | ||||| |  | |                         
GGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGgcaagcatttaaaatatcgcttctgctttaaagtgctaatatccaaattcttacttatgatttttccattttag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125105824|gb|EL159474.1|EL159474
EST:     CAAATCGTCGTTTGTGGGCTACAG                         GGACCTATTGTCACAACAATTAGAGCATTACTGACCCCGCATCCAA
genomic: CAAATCGTCGTTTGTGGGCTACAGgcaagtaaaa ... catatttcagGGACCTATTGTCACAACAATTAGAGCATTACTGACCCCGCATCCAA