1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTATATGGATGGAAAACATGCAAGAATGCTCCTATCGTGAAGGCAATGAAGCAGCAAAATAAAGATGTTATAAATGAATTTAACTTGAGGCTGAAAAATgtaagttataggtctagagtttcttattgtatggtttgagctatcaatttgtgtacatgttgttcaaattatgttgtttcattggtattccag
species | Arabidopsis thaliana |
transcript | AT1G76810.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATGTTATAAATGAATTTAACTTGAGGCTGAAAAAT ATTATAAACGAGTTCCAGGAGCAAGGACTTAACACTGAGCTTTATTACAAGEST: gi|164043607|gb|ES173296.1|ES173296
genomic: GATGTTATAAATGAATTTAACTTGAGGCTGAAAAATgtaagttata ... ggtattccagATTATAAACGAGTTCCAGGAGCAAGGACTTAACACTGAGCTTTATTACAAG
EST: AAATAAAGATGTTATAAATGAATTTAACTTGAGGCTGAAAAAT ATTATAAACGAGTTCCAGGAGCAAGGACTTAACACTGAGCTTTATTACAAGEST: gi|164101762|gb|ES142143.1|ES142143
genomic: AAATAAAGATGTTATAAATGAATTTAACTTGAGGCTGAAAAATgtaagttata ... ggtattccagATTATAAACGAGTTCCAGGAGCAAGGACTTAACACTGAGCTTTATTACAAG
EST: AAATAAAGATGTTATAAATGAATTTAACTTGAGGCTG-AAAAT ATTATAAACGAGTTCCAGGAGCAAGGACTTAACACTGAGCTTTATTACAAG
genomic: AAATAAAGATGTTATAAATGAATTTAACTTGAGGCTGAAAAATgtaagttata ... ggtattccagATTATAAACGAGTTCCAGGAGCAAGGACTTAACACTGAGCTTTATTACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATATGGATGGAAAACATGCAAGAATGCTCCTATCGTGAAGGCAATGAAGCAGCAAAATAAAGATGTTATAAATGAATTTAACTTGAGGCTGAAAAATgtaagttataggtctagagtttcttattgtatggtttgagctatcaatttgtgtacatgttgttcaaattatgttgtttcattggtattccag
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