Sequence
atgc intronic sequence ATGC exonic sequenceTTTGGTGGTGGACATAATGCATGGGTTAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGGATGAGGAATACAGAGTTCATTGTTGCATTGAATAAGgtaacactaattgtcattctgcgaggatgggatttttttctctgttgcaaaacctatatggaaaataatatcttcaccttcctccag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G76810.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G37020.1 (Glycine max), 5'ss of exon 3
TTTGGTGGTGGACATAATGCATGGGTTAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGGATGAGGAATACAGAGTTCATTGTTGCATTGAATAAGgt-aacactaattgtcattctgcgaggatgggatttttttctctgttgcaaaacctatatggaaaataatatcttcaccttcctccag
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TTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAATCACTAAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGgtgagtacttat-gtc-ttacactttcttgagtgtttttttttt-ttaaaaaaggtctttc----acactgttcttgaaacattgcag
upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G30590.1 (Glycine max), 5'ss of exon 2
TTTGGTGGTGGACATAATGCATGGGTTAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGGATGAGGAATACAGAGTTCATTGTTGCATTGAATAAGgtaacactaattgtcattctgcgaggatgggatttttttctctgtt--gcaaaacctatatggaaaataatatcttcaccttcctccag
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TTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAATCCCTAAATCTATTAAAAATGAGGAATACGGAATTCATTGTTGCCTTGAATAAGgtgag--tatttat-gtcttacactttcttgattgtttttttaaataggtgatgctcttgtctttcacactgttcttgaaacgttgcag
upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 3
TTTGGTGGTGGACATAATGCATGGGTTAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGGATGAGGAATACAGAGTTCATTGTTGCATTGAATAAGgtaacact-----aattgt-cattctgcgaggatgggatttttttctctgttgcaaaacctatatggaaaataatatcttcaccttcctccag------
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TTTGGTGGTGGATATTATGCATGGATTAGAACCGCAAACAATAGAATCTCTCAATCTTTTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGgtgaaatttgcagaataatatagcttttggagaagctattacttttgtttttgttcttatcatgtttaattttatttctttgatttcccaattttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164188939|gb|ES133688.1|ES133688EST: AGGAATACAGAGTTCATTGTTGCATTGAATAAG GTGGATAGGCTATATGGATGGAAAACATGCAAG
genomic: AGGAATACAGAGTTCATTGTTGCATTGAATAAGgtaacactaa ... cttcctccagGTGGATAGGCTATATGGATGGAAAACATGCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGGTGGTGGACATAATGCATGGGTTAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGGATGAGGAATACAGAGTTCATTGTTGCATTGAATAAGgtaacactaattgtcattctgcgaggatgggatttttttctctgttgcaaaacctatatggaaaataatatcttcaccttcctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG