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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAGgtctctttcctttctctttaggtaacacttgtttctgcaatacttcagcatgcggatttctgatcttttcttgaaattgttgaacag

Basic information

species Arabidopsis thaliana
transcript AT1G76810.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G37020.1 (Glycine max), 5'ss of exon 6
TGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAGgtctctttcctttctctttaggtaacacttgttt-----ctgca--atacttcagcatgcggatttctgatcttttcttgaaattgttgaacag
||| |||||  | || ||| | ||  |    ||| |||||||| | || ||||||||||||||||||||||||||   ||| |||||||||||    ||  | |    | |  ||| |  ||  |     ||| |  ||| || | | ||  |    || ||  ||| ||||   ||   | |||
TGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGgttagcttattgttgtgtaatataaaagctggctgaatgctgtatgataatttaac-tgtagggacctaattgtttgttgattgtggccaccag

upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G30590.1 (Glycine max), 5'ss of exon 5
TGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAGgtctctttcctttctctttaggtaacacttgttt-------ctgcaatacttcagc-atgcggatttctgatcttttcttgaaattgttgaacag
 || |||||  | || ||| | ||  |    ||| |||||||| | || ||||||||||||||||||||||||||   ||| |||||||||||    ||  | || | | |  ||| |  || ||        |   ||| || | |  | ||||   || ||  ||| ||||   ||   | |||
CGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGgttagcttattgtcacataatataaaagctggttgaatgctttatgataatttaactgtacggac--ctaattgtttgttgattgtggccaccag

upper sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 6
TGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAGgtct-ctttcctttctctttaggtaacacttgtt---tctg-caatacttcagcatgcggatttctgatcttttcttgaaattgttgaacag
||| |||||  ||||||| || ||||| |  |||||||| ||| ||||||||||||||||||||||||| |||||       ||||||||||||| ||||| |||| || ||  |     | |||   || |   |||       ||| |||||  |||| || | |||||| ||||   |||
TGGTGAAGGCATCCCAGACCTATTGCTATTATTGGTTCATTGGACTCAGAAAACAATGGTTGAGAAACTCACATACAGCAGTGAAGTGCAGgtcttctttcttttcactgtattttgagttagttgaatcagatgatagcaggttatgtggattg-tgattttgtgttgaaaatgtttgccag