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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatctctatttactgtttgtaatatacagcgtaacagacaagttattcatcctaaacgtaattgggtaacgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G76810.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76810.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA10G37020.1 (Glycine max), 3'ss of exon 5
--gtatgaatctctatttactgtttgtaatatacagcgtaacagacaagttattcatcctaaacgta-attgggtaa--cgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG
   ||| | | |    | |   | |   | |  | || |||        || |   |  |     |  ||||  | |    ||  || |||||||| |||||| |||||  | || ||| | ||  |    ||| |||||||| | || ||||||||||||||||||||||||||   ||| |||||||||
ttttattagtgttgcctaaaactgttgcacaatctgcttaatgcttttcttgtgagtaatggtgttgtattgtctgagtttttattttttgatatttcagTGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAG

upper sequence: AT1G76810.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA20G30590.1 (Glycine max), 3'ss of exon 4
-gtatgaatctctattta--ctgtt-tgtaatataca----gcgtaacagacaagttattcatcctaaacgtaattgggtaacgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG
  ||| | | |    | |  |||||    ||| | |     || |  |     ||| | |  |  |  |  |   || ||    ||  || || ||||| ||| || |||||  | || ||| | ||  |    ||| |||||||| | || ||||||||||||||||||||||||||   ||| |||||||||
tttattagtgttgcctaaaactgttgcacaatctgcttaatgcttttcctgtgagtgaatggtgttgtat-tgtctgagt--ttttattttttaatatttcagCGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAG

upper sequence: AT1G76810.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv18s0076g00310.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------gtatga-atctctatttactgtttgtaatatacagcgtaacaga-caagttattcatcctaaacgtaattgggtaacgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG
                             | | | ||||   |  |   | |  ||   | | |   ||| | | | ||||| | |       |     | ||   | | ||  ||    |||||||| |||||  ||||||| || ||||| |  |||||||| ||| ||||||||||||||||||||||||| |||||       |||||||||
gtatttctcatagcctctatgtctacccttgttatatcttgttccaggctcttcaactgaaaactctacaaaacgatttattta-caagccaatgtcctgatattttggattggtggatgtacagTGGTGAAGGCATCCCAGACCTATTGCTATTATTGGTTCATTGGACTCAGAAAACAATGGTTGAGAAACTCACATACAGCAGTGAAGTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacaagttattcatcctaaacgtaattgggtaacgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG
                                           ttgatatta  TA-rich tract