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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTGGATTCGTTGCGTAAAACCCTACCGGGCATCAAACCGATCTACATTAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATGgtaatacgcaaatatttttttggtttaaattttcatgcatgtactattcgttttaattacttcaatataaaaaaggtaccatcttttgttattgtag

Basic information

species Arabidopsis thaliana
transcript AT1G75900.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078135|gb|DR373892.1|DR373892
EST:     TAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATG                         GGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTG
genomic: TAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATGgtaatacgca ... gttattgtagGGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTG
EST: gi|86078830|gb|DR374587.1|DR374587
EST:     TAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATG                         GGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTG
genomic: TAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATGgtaatacgca ... gttattgtagGGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTG
EST: gi|86081430|gb|DR377187.1|DR377187
EST:     TAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATG                         GGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTG
genomic: TAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATGgtaatacgca ... gttattgtagGGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTG
EST: gi|19797000|gb|AU229027.1|AU229027
EST:     TAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATG                         GGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTG
genomic: TAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATTATGgtaatacgca ... gttattgtagGGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTG