1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcttctctcatattttactaaaaagcctaatacgtttgatatatatacattatactaaataacatttttaatagacggctatatttctaggtaattagtataatgtttagtgtgaaatgaaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCAATTGGGTGTGTACCATCACAGAGAACGTTAGGAGGAGGTATCTTGAGAG
species | Arabidopsis thaliana |
transcript | AT1G75900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACT AAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCAEST: gi|86081430|gb|DR377187.1|DR377187
genomic: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTgtaagcttct ... aaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA
EST: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACT AAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTRGTGCACCACCAEST: gi|116456400|gb|EG498992.1|EG498992
genomic: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTgtaagcttct ... aaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA
EST: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACT AAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA
genomic: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTgtaagcttct ... aaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA
acggctatatttctaggtaattagtataatgtttagtgtgaaatgaaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCAATTGGGTGTGTACCATCACAGAGAACGTTAGGAGGAGGTATCTTGAGAG
taattagtataatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttctctcatattttactaaaaagcctaatacgtttgatatatatacattatactaaataacatttttaatagacggctatatttctaggtaattagtataatgtttagtgtgaaatgaaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCAATTGGGTGTGTACCATCACAGAGAACGTTAGGAGGAGGTATCTTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG