1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagaaaattccggctcgagtcttctacagtcatgatgttaagaaatgtctttaaactaacgtcatttaaataaaaaatcatgctctgtttgtatttgcagCCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATCTAAAATCGAAAGATCTTTTAACCGGTGTATCGTTTGCGTCCGGAGGTTC
species | Arabidopsis thaliana |
transcript | AT1G75900.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTTGCCACGGGGAGATTCTGCGATGGACGAGTCCCTGCCGATTTGCTAG CCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATCEST: gi|164211180|gb|ES018664.1|ES018664
genomic: AGTTGCCACGGGGAGATTCTGCGATGGACGAGTCCCTGCCGATTTGCTAGgttccttctc ... gtatttgcagCCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATC
EST: ATTCTGCGATGGACGAGTCCCTGCCGATTTGCTAG CCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATCEST: gi|19877084|gb|AU237915.1|AU237915
genomic: ATTCTGCGATGGACGAGTCCCTGCCGATTTGCTAGgttccttctc ... gtatttgcagCCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATC
EST: AGTTGCCACGGGGAGATTCTGCGATGGACGAGTCCCTGCCGATTTGCTAG CCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATC
genomic: AGTTGCCACGGGGAGATTCTGCGATGGACGAGTCCCTGCCGATTTGCTAGgttccttctc ... gtatttgcagCCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATC
tgtctttaaactaacgtcatttaaataaaaaatcatgctctgtttgtatttgcagCCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATCTAAAATCGAAAGATCTTTTAACCGGTGTATCGTTTGCGTCCGGAGGTTC
aactaac putative branch site (score: 1)
ttaaactaacgtcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaaaattccggctcgagtcttctacagtcatgatgttaagaaatgtctttaaactaacgtcatttaaataaaaaatcatgctctgtttgtatttgcagCCGAAGAACTGGGAATAAAATCAATTGTACCAGCATACCTAGATCCGAATCTAAAATCGAAAGATCTTTTAACCGGTGTATCGTTTGCGTCCGGAGGTTC
aagaaaa
- - - - - - - - - - cttctac
- - - - - - - - - - - - - - - - - - - taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa