Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACATAGCCAATACATACTATACTCTACGTGCAAGACCTGAATACGACGTCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTgtaagcttctctcatattttactaaaaagcctaatacgtttgatatatatacattatactaaataacatttttaatagacggctatatttctaggtaattagtataatgtttagtgtgaaatgaaattggcag

Basic information

species Arabidopsis thaliana
transcript AT1G75900.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078830|gb|DR374587.1|DR374587
EST:     TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACT                         AAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA
genomic: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTgtaagcttct ... aaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA
EST: gi|86081430|gb|DR377187.1|DR377187
EST:     TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACT                         AAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTRGTGCACCACCA
genomic: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTgtaagcttct ... aaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA
EST: gi|116456400|gb|EG498992.1|EG498992
EST:     TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACT                         AAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA
genomic: TCGATTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTgtaagcttct ... aaattggcagAAACTATATGGATATGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCA