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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGgtaaaaatctgaaactccttgaagaagagttttggattatgaattctgttgtgaaagtgttaaattatgtgccctgatgtcctatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G56110.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 6
TCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGgtaaaaatct--gaaactc-cttgaagaagagttttggattatgaattctgttgtgaaagtgttaaattatgtgccctgatgtcctatgcag
||||| || ||||| || |||||||| || || |||||| | || ||||| |||||||||||||| ||||| || ||||| |||||||| || |||||||||     |||   | | || ||| |  || |  |   |  | |  ||     | ||  |   || |  | ||| ||   |||          
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttctttcatattcactttagcaatatctcatggctgtacatagcactttgtcatgatttagctttgtacctcaatgcag-------

upper sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 6
TCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGgtaaaaatctg--aaactccttgaagaagagttttggattatgaat--tctgttgtgaaagtgttaaattatgtgccctgatgtcctatgcag
||||| || ||||| || |||||||| || || |||||  | || |||||||||||||||||||| ||||| || ||||| |||||||| || ||| |||||     |||   | | ||  |  || | | ||   |  | |  ||   |  |||| |   | ||    |||    | | |||          
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatattcactttagcatatttcatggctgtacatagccctttgtcatgattttgtggtat----cttaatgcag-------

upper sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
TCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGgtaaaaatctgaaactccttgaagaagagttttggatt--atgaatt-ctgttgtgaaagtgttaaattatgtgccctgatgtcctatgcag--
||||| || ||||| || ||||||||   ||||||||| ||||| ||||||||||||||||||||||| || || || || || ||||| ||||||||||||||   |||  || | |||  |      |||    |   ||| ||  |   | |  |  || |||||| |||  |   || | || ||     
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctataaattcttatatggtcatttcatttctcatggatggcaactttttatctgataaatt-tgttgcacaatcttctgtgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124718462|gb|EH809864.1|EH809864
EST:     TCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTG                         ATGGTGCAACTACTGCTTTTGGTGAGAAGCTTCGCGAACAAGTTGAGGAAA
genomic: TCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGgtaaaaatct ... tcctatgcagATGGTGCAACTACTGCTTTTGGTGAGAAGCTTCGCGAACAAGTTGAGGAAA
EST: gi|125030365|gb|EL102634.1|EL102634
EST:     TCCCGGATTGATTGTTTTGCTG                         ATGGTGCAACTACTGCTTTTGGTGAGAAGCTTCGCGAACAAGTTGAGGAAA
genomic: TCCCGGATTGATTGTTTTGCTGgtaaaaatct ... tcctatgcagATGGTGCAACTACTGCTTTTGGTGAGAAGCTTCGCGAACAAGTTGAGGAAA