1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taatttatggttgattcttgtttttgtgttctgtttttgtttcattgttttggttttgtcattgatgcttttggaattggttttaatgtgatattggtagGTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGGTCAAGGAGGGAAAGAAACCCAAGTTCAGTTTAGGATTGGCTGAGCCTAA
species | Arabidopsis thaliana |
transcript | AT1G56110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAG GTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGGEST: gi|116482901|gb|EG525493.1|EG525493
genomic: CTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAGgtcagactct ... atattggtagGTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGG
EST: CTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAG GTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGGEST: gi|163979074|gb|EL996700.1|EL996700
genomic: CTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAGgtcagactct ... atattggtagGTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGG
EST: AACGCCGTCTCTGAAG GTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCT
genomic: AACGCCGTCTCTGAAGgtcagactct ... atattggtagGTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCT
tgttttggttttgtcattgatgcttttggaattggttttaatgtgatattggtagGTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGGTCAAGGAGGGAAAGAAACCCAAGTTCAGTTTAGGATTGGCTGAGCCTAA
ttttaat putative branch site (score: 3)
ttttaatgtgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttatggttgattcttgtttttgtgttctgtttttgtttcattgttttggttttgtcattgatgcttttggaattggttttaatgtgatattggtagGTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGGTCAAGGAGGGAAAGAAACCCAAGTTCAGTTTAGGATTGGCTGAGCCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttta