1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCGGTGCCCGTTTGATTTCACATGCTGGAAGTCTGACTAACCTTGCTAAATGCCCATCTTCCACCCTCCAGATTCTTGGAGCCGAGAAGGCTCTTTTCAGgtgcaatatctggcactatatttttaatgttcaccagtttccttttagtgctgcttgtgacatgaactgctgtggtatttcag
species | Arabidopsis thaliana |
transcript | AT1G56110.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGAAGGCTCTTTTCAG GGCACTTAAAACACGTGGAAACACTCCCAAGTATGGATTGATTTTCCATTCEST: gi|125081726|gb|EL142839.1|EL142839
genomic: AGAAGGCTCTTTTCAGgtgcaatatc ... ggtatttcagGGCACTTAAAACACGTGGAAACACTCCCAAGTATGGATTGATTTTCCATTC
EST: TGCCCATCTTCCACCCTCCAGATTCTTGGAGCCGAGAAGGCTC-TTTCAG GGCACTTAAAACACGTGGAAACACTCCCAAGTATGGATTGATTTTCCATTC
genomic: TGCCCATCTTCCACCCTCCAGATTCTTGGAGCCGAGAAGGCTCTTTTCAGgtgcaatatc ... ggtatttcagGGCACTTAAAACACGTGGAAACACTCCCAAGTATGGATTGATTTTCCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGTGCCCGTTTGATTTCACATGCTGGAAGTCTGACTAACCTTGCTAAATGCCCATCTTCCACCCTCCAGATTCTTGGAGCCGAGAAGGCTCTTTTCAGgtgcaatatctggcactatatttttaatgttcaccagtttccttttagtgctgcttgtgacatgaactgctgtggtatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG