Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGAAGCTACTAAAATCCCATGCCAGAGCAATGAGTTTGTTCTTGAGCTTCTCAGAGGTGTTCGCCAGCATTTTGATAGGTTTATCAAGGACTTAAAGgtgtgatctcctttctatgtgtttaaaatctttttgtctgtttgcttatctcatatggtttgtgttctcataaaaaatttctgtttatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G56110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 2
ATTTGAAGCTACTAAAATCCCATGCCAGAGCAATGAGTTTGTTCTTGAGCTTCTCAGAGGTGTTCGCCAGCATTTTGATAGGTTTATCAAGGACTTAAAGgtgtgatctcctt-tctatgtgtttaaaatct--ttttgtctgtttgcttatc-------tcatatggtttgtgtt--ctcataaaaaatttctgtttatgtag----------------
 ||||||| ||||||||| || ||||| ||||||||||||||||||||||||||| | ||||| ||   |||||||||||||||||| |||||  | ||||| || | |  || | | |    | ||||| |  || || || ||||  |||        | | | |||  | | |   |  |    ||||||| ||   |||                 
CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaattaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829863|gb|CK119547.1|CK119547
EST:     TTCTCAGAGGTGTTCGCCAGCATTTTGATAGGTTTATCAAGGACTTAAAG                         CCTGGTGATCTTGAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGA
genomic: TTCTCAGAGGTGTTCGCCAGCATTTTGATAGGTTTATCAAGGACTTAAAGgtgtgatctc ... gtttatgtagCCTGGTGATCTTGAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGA
EST: gi|116482901|gb|EG525493.1|EG525493
EST:     TTCTCAGAGGTGTTCGCCAGCATTTTGATAGGTTTATCAAGGACTTAAAG                         CCTGGTGATCTTGAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGA
genomic: TTCTCAGAGGTGTTCGCCAGCATTTTGATAGGTTTATCAAGGACTTAAAGgtgtgatctc ... gtttatgtagCCTGGTGATCTTGAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGA