1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgttttgtgcttttccctttcagattgtgtgttttcctcgagaaaattggtagctgaactgtttataatgttattacagGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAACTATCTTTACGCCCGTGTTTCAAAGATGATTGATGACAAGTCAAAGTTG
species | Arabidopsis thaliana |
transcript | AT1G56110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGAGAGTCAG GGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAAEST: gi|124972846|gb|EL046515.1|EL046515
genomic: ATGCTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGAGAGTCAGgtttgttttg ... gttattacagGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAA
EST: CTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGAGAGTCAG GGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAAEST: gi|116482901|gb|EG525493.1|EG525493
genomic: CTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGAGAGTCAGgtttgttttg ... gttattacagGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAA
EST: ATGCTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGGGAGTCAG GGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAA
genomic: ATGCTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGAGAGTCAGgtttgttttg ... gttattacagGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAA
ttgtgtgttttcctcgagaaaattggtagctgaactgtttataatgttattacagGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAACTATCTTTACGCCCGTGTTTCAAAGATGATTGATGACAAGTCAAAGTTG
tgtttataatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttgtgcttttccctttcagattgtgtgttttcctcgagaaaattggtagctgaactgtttataatgttattacagGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAACTATCTTTACGCCCGTGTTTCAAAGATGATTGATGACAAGTCAAAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG