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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGGTTGAACTATCAAGAGAACTAAATGGTTTCCAGTACTCGTTTTACGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttttatcatcatcgtcacgataacgttttacaaacgttttgacatctgtcttgtctgatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G54030.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083143|gb|DR378902.1|DR378902
EST:     GAGTTATCAAGTCTAAGACTTATA                         CATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
genomic: GAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
EST: gi|164100030|gb|ES174378.1|ES174378
EST:     GACTTCTTTAGCTCGTATCCAAAACAGAGTTATCAAGTCTAAGACTTATA                         CATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGG
genomic: GACTTCTTTAGCTCG-ATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGG
EST: gi|116463066|gb|EG505658.1|EG505658
EST:     TGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATA                         CATTCGAGACAGGAAA
genomic: CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAA
EST: gi|116473435|gb|EG516027.1|EG516027
EST:     CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATA                         CATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
genomic: CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
EST: gi|86080841|gb|DR376598.1|DR376598
EST:     CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATA                         CATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
genomic: CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA