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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAGAACCGAGTTGACGCAAGCTTTCCTCCTTATGGAGTCACTGTAGGACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGgtaattgtattgatcacttcaaatatctataactatttattcatttgtgtttaatttgattgtttttttttttcctttag

Basic information

species Arabidopsis thaliana
transcript AT1G54030.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116463066|gb|EG505658.1|EG505658
EST:     ACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTG                         CTAAATTCATGGGAATTCCTAAAATCTCTCCGATTCTCCTAACCACGGCGG
genomic: ACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGgtaattgtat ... tttcctttagCTAAATTCATGGGAATTCCTAAAATCTCTCCGATTCTCCTAACCACGGCGG
EST: gi|125170552|gb|EL193971.1|EL193971
EST:     ACAAGCCACCGGACGGTGG-CCGATGGTTCTATCGTTCCTGATTATCTTG                         CTAAAATTCATGGGAATTCCTAAAATCTCTCCGATTCTCC
genomic: ACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGgtaattgtat ... tttcctttagCTAAA-TTCATGGGAATTCCTAAAATCTCTCCGATTCTCC
EST: gi|164210933|gb|ES179242.1|ES179242
EST:     ACAAGCCACCGGACGGTGGTCCGATGGTTCAATCGTTCCTGATTATCTTG                         CTAAATTCATGGGAATTC
genomic: ACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGgtaattgtat ... tttcctttagCTAAATTCATGGGAATTC
EST: gi|125312545|gb|EL326630.1|EL326630
EST:     ACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTG                         CTAAATTCATGGGAATTCCTAAAATCTCTCCGATTCTCC
genomic: ACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGgtaattgtat ... tttcctttagCTAAATTCATGGGAATTCCTAAAATCTCTCCGATTCTCC