1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacagaaaattctaaaacttgagattgcaaaagtatagtgttaggtcaaatcttgaaggagttttaggttaaaatagatctttgaatgatttttatacagATGACTTTGTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGGACAAATCAAACACGTTCTGAAGCTATCTACTTGATCTACATTGGTTCTG
species | Arabidopsis thaliana |
transcript | AT1G54030.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCGCCGACGCTACCGTTCTTGGCTCTCCTCCGGAGACG ATGACTTTGTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGGEST: gi|116463066|gb|EG505658.1|EG505658
genomic: ATCGCCGACGCTACCGTTCTTGGCTCTCCTCCGGAGACGgtcagttttt ... ttttatacagATGACTTTGTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGG
EST: CTAATTTCGCCATCGCCGACGCTACCGTTCTTGGCTCTCCTCCGGAGACG ATGACTTTGTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGGEST: gi|125239629|gb|EL253714.1|EL253714
genomic: CTAATTTCGCCATCGCCGACGCTACCGTTCTTGGCTCTCCTCCGGAGACGgtcagttttt ... ttttatacagATGACTTTGTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGG
EST: CTAATTTCGCCATCGCCGACGCTACCGTTCTTGGCTCTCCTCCGGAGACG ATGACTTTGTCACAACAAGTGAAGAAATT
genomic: CTAATTTCGCCATCGCCGACGCTACCGTTCTTGGCTCTCCTCCGGAGACGgtcagttttt ... ttttatacagATGACTTTGTCACAACAAGTGAAGAAATT
tcaaatcttgaaggagttttaggttaaaatagatctttgaatgatttttatacagATGACTTTGTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGGACAAATCAAACACGTTCTGAAGCTATCTACTTGATCTACATTGGTTCTG
tttttat CT-rich tract
ttaaaatagatctttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacagaaaattctaaaacttgagattgcaaaagtatagtgttaggtcaaatcttgaaggagttttaggttaaaatagatctttgaatgatttttatacagATGACTTTGTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGGACAAATCAAACACGTTCTGAAGCTATCTACTTGATCTACATTGGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-acagaaa
- - - - - -ctaaaac
- - - - - - - - - - - - - gcaaaag
- - - - - - - - - - - - - - - - - - - - - - -tcaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataga