1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagccttttatcatcatcgtcacgataacgttttacaaacgttttgacatctgtcttgtctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGAGTAATTGCTCAGCTAAAAATGTATGCGCCAAGCCTGAAGAGTATATCTT
species | Arabidopsis thaliana |
transcript | AT1G54030.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGTTATCAAGTCTAAGACTTATA CATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGAEST: gi|164100030|gb|ES174378.1|ES174378
genomic: GAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
EST: GACTTCTTTAGCTCGTATCCAAAACAGAGTTATCAAGTCTAAGACTTATA CATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGEST: gi|116463066|gb|EG505658.1|EG505658
genomic: GACTTCTTTAGCTCG-ATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGG
EST: TGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATA CATTCGAGACAGGAAAEST: gi|116473435|gb|EG516027.1|EG516027
genomic: CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAA
EST: CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATA CATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGAEST: gi|86080841|gb|DR376598.1|DR376598
genomic: CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
EST: CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATA CATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
genomic: CGACTTCTTTAGCTCGATCCAAAACAGAGTTATCAAGTCTAAGACTTATAgtaagccttt ... tctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGA
tcatcgtcacgataacgttttacaaacgttttgacatctgtcttgtctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGAGTAATTGCTCAGCTAAAAATGTATGCGCCAAGCCTGAAGAGTATATCTT
tcttgtct CT-rich tract
ttttacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttttatcatcatcgtcacgataacgttttacaaacgttttgacatctgtcttgtctgatgcagCATTCGAGACAGGAAACGCTGCTTGTTGTGGAACTGGCTCTATCAACGGGAGTAATTGCTCAGCTAAAAATGTATGCGCCAAGCCTGAAGAGTATATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA