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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGGTCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAGgtttcatgaactgttcatacttttatcaatgcttttaatctgttgtgcttagagatcaggtctcacatattttttgtttaatcggtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G31190.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31190.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA06G25880.1 (Glycine max), 5'ss of exon 9
AGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGGTCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAGgttt-catgaactgttcatacttttatcaatgcttttaatctgttgtgcttagagatca--ggtctcacatattttttg----tttaatcggtgtag----
 |||||||||||||| ||  | ||  |||||||||| ||||| ||||||| ||| |||||||| ||||||||||| || || ||    || ||  | ||||||    |   ||  |  | |||||   |   | ||||   ||      || ||   ||  ||| ||   |   | |      | |||  ||| |      
GGTTGAGGAAGCTGGTGGCACAGTTTCTCGGATGGATGGAGGAAAGTTTTGTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGgttagtcttttctaattttgcttttgggag-acatttatattgcaccttttggattacactggtgtcctttgactctaagagctctaacaggtttcatcgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074395|gb|DR370152.1|DR370152
EST:     CTGTGTTTGATAGGTCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAG                         CTTCTGGAGAGAATTGCACCCGCAACTGAGAATTTGAAGTCGAAAGGAATC
genomic: CTGTGTTTGATAGGTCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAGgtttcatgaa ... atcggtgtagCTTCTGGAAAGAATTGCACCCGCAACTGAGAATTTGAAGTCGAAAGGAATC
EST: gi|125241084|gb|EL255169.1|EL255169
EST:     CTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAG                         CTTCTGGAAAGAATTGCACCCGCAACTGAGAATTTGAAGTCGAAAGGAATC
genomic: CTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAGgtttcatgaa ... atcggtgtagCTTCTGGAAAGAATTGCACCCGCAACTGAGAATTTGAAGTCGAAAGGAATC