Sequence
atgc intronic sequence ATGC exonic sequenceCGGTGCTGCTGCAGTTGACATGTGTCATGTTGCACTTGGGATTGCGGAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTgtagtcttcttcatccttcttgttgtttttttcttactaaagtacttaagttgtagagcttaatccatgtcagaaaatggacacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G31190.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G31190.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G25880.1 (Glycine max), 5'ss of exon 8
CGGTGCTGCTGCAGTTGACATGTGTCATGTTGCACTTGGGATTGCGGAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTgtagtcttcttcatccttcttgttgtt--tttttcttactaa-agtacttaagttgtagagcttaatcca---tgtcagaaaatggacacag--------
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TGGCGCAGCTGCCGTGGACATGTGTCATGTTGCATTGGGAATTGTAGAAGCTTATTGGGAATATCGTCTAAAGCCATGGGATATGGCTGCTGGTGTTTTGgtatgctttgagttttatatcattgataatgattctgactagtaagccttgaatctttgagactaaagtaatttttcctgaagagattatttgtctaatg
upper sequence: AT1G31190.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g01800.t01 (Vitis vinifera), 5'ss of exon 9
CGGTGCTGCTGCAGTTGACATGTGTCATGTTGCACTTGGGATTGCGGAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTgtagtcttcttcatccttcttgttgtttttttcttactaaagtacttaagttgtagagcttaatccatgtcagaaaatggacacag---------------
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TGGTGCTGCTGCAGTGGACATGTGCCATGTTGCTCTTGGGATTGTAGAAGCGTATTGGGAATACCGTCTAAAACCATGGGATATGGCTGCTGGCGTTTTGgtacttttttttttttttccaaagacctctattctgattttatacttaa-caatggtcaataaggatggtaagagggtaggttcaggatggagtgaccctaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86074395|gb|DR370152.1|DR370152EST: CATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTT ATAGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTT
genomic: CATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTgtagtcttct ... atggacacagATAGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGTGCTGCTGCAGTTGACATGTGTCATGTTGCACTTGGGATTGCGGAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTgtagtcttcttcatccttcttgttgtttttttcttactaaagtacttaagttgtagagcttaatccatgtcagaaaatggacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT