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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcttcttcatccttcttgttgtttttttcttactaaagtacttaagttgtagagcttaatccatgtcagaaaatggacacagATAGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGGTCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCA

Basic information

species Arabidopsis thaliana
transcript AT1G31190.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31190.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G25880.1 (Glycine max), 3'ss of exon 8
-------gtagtcttcttcatccttcttgttgtttttttcttactaaagtacttaagttgtagagc-----ttaatccatgtcagaaaatgga--cacagATAGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGGTCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCA
        ||   |   |  |  || |  ||    |||  | ||| ||  | | || |   |||       ||| || || |      ||  |  |  |||| |||||||||||||| ||  | ||  |||||||||| ||||| ||||||| ||| |||||||| ||||||||||| || || ||    || ||  | |
ctcttgaataaattcggttttatttatcattccagtttcttaactgaatcattcaattatgagaatattttttactcaattttgttccatccattcgtagATGGTTGAGGAAGCTGGTGGCACAGTTTCTCGGATGGATGGAGGAAAGTTTTGTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074395|gb|DR370152.1|DR370152
EST:     CATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTT                         ATAGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTT
genomic: CATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTgtagtcttct ... atggacacagATAGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttactaaagtacttaagttgtagagcttaatccatgtcagaaaatggacacagATAGTTGAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGGTCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCA
      taaagta  TA-rich tract